PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn303741
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 165aa    MW: 18232.9 Da    PI: 6.7421
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn303741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.65e-4461051100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +Ca+Ck+lrr+CakdC+++pyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA ar+rdPvyG+vg i+ lq+q++ql+ +la++++
  Achn303741   6 PCASCKLLRRRCAKDCIFSPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEATARMRDPVYGCVGAISYLQNQVSQLQMQLAVAQA 104
                 7***********************************************************************************************998 PP

      DUF260 100 e 100
                 e
  Achn303741 105 E 105
                 7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.5115106IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-436103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGGNSPCASC KLLRRRCAKD CIFSPYFPPD DPHKFAIVHK VFGASNVSKM LQELPVHQRA  60
DAVSSLVYEA TARMRDPVYG CVGAISYLQN QVSQLQMQLA VAQAEILCIQ MQQEPTLPMN  120
QIDPVDEKSL LLSDTNFNNL PQYLGFASSS SVIQDPPKRE SLWT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257046.17e-99PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW32e-80LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A068ULU37e-99A0A068ULU3_COFCA; Uncharacterized protein
STRINGVIT_06s0004g07200.t014e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.19e-82LBD family protein